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AT1G47500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding protein 47C'
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding protein 47C' (RBP47C'); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47C (TAIR:AT1G47490.1); Has 31938 Blast hits to 20447 proteins in 871 species: Archae - 18; Bacteria - 2118; Metazoa - 16550; Fungi - 3781; Plants - 6384; Viruses - 46; Other Eukaryotes - 3041 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC007519EMBL:AK227406
EMBL:BT030029EMBL:CP002684EnsemblPlants:AT1G47500EnsemblPlants:AT1G47500.1
entrez:841159Gene3D:3.30.70.330GeneID:841159Genevisible:Q9SX80
GO:GO:0000166GO:GO:0005634GO:GO:0006397GO:GO:0008143
GO:GO:0010494GO:GO:0034605Gramene:AT1G47500.1hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF403HOGENOM:HOG000186228InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q9SX80KEGG:ath:AT1G47500OMA:VEFQSPEPaxDb:Q9SX80
Pfam:PF00076Pfam:Q9SX80Pfscan:PS50102PhylomeDB:Q9SX80
PIR:C96515PRIDE:Q9SX80PRO:PR:Q9SX80PROSITE:PS50102
ProteinModelPortal:Q9SX80Proteomes:UP000006548RefSeq:NP_175181.1SMART:SM00360
SMR:Q9SX80STRING:3702.AT1G47500.1SUPFAM:SSF54928TAIR:AT1G47500
tair10-symbols:ATRBP47C'tair10-symbols:RBP47C'UniGene:At.22563UniGene:At.64064
UniProt:Q9SX80
Coordinates (TAIR10) chr1:+:17432682..17434805
Molecular Weight (calculated) 48634.70 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.78
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)