AT1G65030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: protein binding, nucleotide binding; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 5965 Blast hits to 4406 proteins in 385 species: Archae - 22; Bacteria - 1754; Metazoa - 1570; Fungi - 1477; Plants - 405; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24156798..24158511 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37457.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP 101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE 201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN 301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)