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AT1G47490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding protein 47C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding protein 47C (RBP47C); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47C' (TAIR:AT1G47500.1); Has 33065 Blast hits to 20848 proteins in 888 species: Archae - 16; Bacteria - 2226; Metazoa - 17066; Fungi - 3800; Plants - 6752; Viruses - 82; Other Eukaryotes - 3123 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC007519EMBL:AF344325
EMBL:AY035180EMBL:AY062960EMBL:BX813781EMBL:CP002684
EnsemblPlants:AT1G47490EnsemblPlants:AT1G47490.1entrez:841157Gene3D:3.30.70.330
GeneID:841157Genevisible:Q9SX79GO:GO:0000166GO:GO:0005634
GO:GO:0006397GO:GO:0008143GO:GO:0010494GO:GO:0034605
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF403HOGENOM:HOG000186228InParanoid:Q9SX79
InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9SX79KEGG:ath:AT1G47490
OMA:GRERWANPaxDb:Q9SX79Pfam:PF00076Pfam:Q9SX79
Pfscan:PS50102PhylomeDB:Q9SX79PIR:B96515PRIDE:Q9SX79
PRO:PR:Q9SX79PROSITE:PS50102ProteinModelPortal:Q9SX79Proteomes:UP000006548
RefSeq:NP_175180.1RefSeq:NP_973984.1SMART:SM00360SMR:Q9SX79
STRING:3702.AT1G47490.1SUPFAM:SSF54928TAIR:AT1G47490tair10-symbols:ATRBP47C
tair10-symbols:RBP47CUniGene:At.22563UniProt:Q9SX79
Coordinates (TAIR10) chr1:+:17424801..17427182
Molecular Weight (calculated) 48500.60 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.86
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)