suba logo
AT3G17970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid outer membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocon at the outer membrane of chloroplasts 64-III
Curator
Summary (TAIR10)
Integral chloroplast outer membrane protein.
Computational
Description (TAIR10)
translocon at the outer membrane of chloroplasts 64-III (TOC64-III); FUNCTIONS IN: binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; LOCATED IN: integral to chloroplast outer membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Amidase (InterPro:IPR000120), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-V (TAIR:AT5G09420.1); Has 32911 Blast hits to 27744 proteins in 2680 species: Archae - 530; Bacteria - 15888; Metazoa - 4120; Fungi - 2515; Plants - 2100; Viruses - 0; Other Eukaryotes - 7758 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G17970-MONOMERBioGrid:4995eggNOG:COG0154eggNOG:COG0457
eggNOG:KOG1124eggNOG:KOG1211EMBL:AB019230EMBL:CP002686
EnsemblPlants:AT3G17970EnsemblPlants:AT3G17970.1entrez:819660Gene3D:1.25.40.10
Gene3D:3.90.1300.10GeneID:819660Genevisible:Q9LVH5GO:GO:0009507
GO:GO:0009536GO:GO:0009941GO:GO:0015031GO:GO:0016884
GO:GO:0031359Gramene:AT3G17970.1hmmpanther:PTHR11895hmmpanther:PTHR11895:SF39
HOGENOM:HOG000116697InParanoid:Q9LVH5InterPro:IPR000120InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734InterPro:IPR023631KEGG:00970+6.3.5.7
KEGG:ath:AT3G17970OMA:AIEDFRYPANTHER:PTHR11895PaxDb:Q9LVH5
Pfam:PF00515Pfam:PF01425Pfam:PF13414Pfam:Q9LVH5
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9LVH5PRIDE:Q9LVH5
PRO:PR:Q9LVH5PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q9LVH5
Proteomes:UP000006548RefSeq:NP_188424.2SMART:SM00028SMR:Q9LVH5
STRING:3702.AT3G17970.1SUPFAM:SSF48452SUPFAM:SSF75304SwissPalm:Q9LVH5
TAIR:AT3G17970tair10-symbols:atToc64-IIItair10-symbols:TOC64-IIITMHMM:TMhelix
UniGene:At.8043UniProt:Q9LVH5
Coordinates (TAIR10) chr3:+:6148030..6151794
Molecular Weight (calculated) 64028.90 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.14
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)