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AT1G07840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Sas10/Utp3/C1D family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 652 Blast hits to 650 proteins in 205 species: Archae - 2; Bacteria - 28; Metazoa - 259; Fungi - 134; Plants - 81; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111F0ZeggNOG:KOG3117EMBL:AK317128EMBL:AY056325
EMBL:AY091190EMBL:CP002684EnsemblPlants:AT1G07840EnsemblPlants:AT1G07840.1
EnsemblPlants:AT1G07840.2entrez:837299ExpressionAtlas:Q93ZQ9GeneID:837299
Gramene:AT1G07840.1Gramene:AT1G07840.2hmmpanther:PTHR13237HOGENOM:HOG000029110
IntAct:Q93ZQ9InterPro:IPR007146OMA:YEMTAYLPfam:PF04000
PhylomeDB:Q93ZQ9Proteomes:UP000006548RefSeq:NP_563798.1RefSeq:NP_973785.1
STRING:3702.AT1G07840.1TAIR:AT1G07840UniGene:At.14833UniProt:Q93ZQ9
Coordinates (TAIR10) chr1:+:2424603..2426425
Molecular Weight (calculated) 36078.10 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.93
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEITKPVLV GIVKKEAPQL ASVLREMKNV LDVVRSKVEA LTALVKANSF PTAGGISYLE AKHLLLLSYC QDLVYYILRK AKGLSIDGHP LVRSLVEIRM
101: FLEKIRPIDK KLQYQIQKLT TAGGPVTELA HSEGKGSCEA QKSEDLSNYK PKPDLLADKE DDQEDDGVYR PPKFAPMSME DKTSKQERDA ARKEKHFFRQ
201: ATENTYMKDV LDDLEDRPEE IRDYYGVESN EQKRFMAQYE RQQKAEEELF TRAPRTKEDK KREKRLKSSS GLHELTENFY DDIKFLDKDG EKPRSFGRNK
301: RGGPFKKRKT RH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)