AT2G24990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Serine/threonine-protein kinase Rio1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Serine/threonine-protein kinase Rio1; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), Serine/threonine-protein kinase Rio1 (InterPro:IPR017407), RIO kinase (InterPro:IPR000687), RIO kinase, conserved site (InterPro:IPR018935), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Serine/threonine-protein kinase Rio1 (TAIR:AT5G37350.1); Has 22840 Blast hits to 11518 proteins in 923 species: Archae - 425; Bacteria - 1111; Metazoa - 8928; Fungi - 2169; Plants - 1017; Viruses - 356; Other Eukaryotes - 8834 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10625285..10628299 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61084.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEVVLVTEP PPTIPPVVEY EEEHDDDDDD DLSLSSDSDI AEALDWLDGK DDDELIGGGF SLHARRPNAH GGHGSRPNSS SLQPISNKAQ KLTSHVRASP 101: LEGWEGRVKV GMSNSVTTAI RGSLRDTEIG RSRNTDKADR ATVEQALDPR TRMVLFRMLN RGVFNDVNGC ISTGKEANVY HATKSDGSEL AIKVYKTSVL 201: VFKDRDRYVQ GDYRFRYGYC RHNPRKMVKT WAEKEQRNLK RLHAAGIRCP AVILLRLHVL VMEFIGRDGW AAPRLKDAAL SLDKLRECYL ELIIQMRVLY 301: QKCKLVHGDL SEYNILYFEG HLYIIDVSQS VDLDHPLALN FLREDCDHVS DFFKKHGVAV MTIRELFDFI VDPAITDENV DSYLEEVQRK VIERGEISVE 401: DEIADSVFMK SYIPKSLDAV NNPEADVAKI TSGQDTGDML YQTITGLKDA LPKIEEQKIE VNDEEKEEEG EEEEDGESEE GSEEEESEEE LGHEDKKAAR 501: KEHKKKVKEE KRESRKTKTP KSVKKRKKKV SKPHKTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)