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AT2G34570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PIN domain-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 21 (MEE21); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); Has 718 Blast hits to 716 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 251; Plants - 108; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1412eggNOG:KOG3164EMBL:AY102549EMBL:AY954813
EMBL:CP002685EnsemblPlants:AT2G34570EnsemblPlants:AT2G34570.1entrez:818021
Gene3D:3.40.50.1010GeneID:818021GO:GO:0005730GO:GO:0006364
GO:GO:0009793GO:GO:0032040GO:GO:0070181Gramene:AT2G34570.1
hmmpanther:PTHR12416hmmpanther:PTHR12416:SF3HOGENOM:HOG000239062InterPro:IPR006984
InterPro:IPR029060KEGG:ath:AT2G34570KO:K14773OMA:SMTFGFR
Pfam:PF04900PhylomeDB:Q8L8C2Proteomes:UP000006548RefSeq:NP_181004.2
SMR:Q8L8C2STRING:3702.AT2G34570.1SUPFAM:SSF88723TAIR:AT2G34570
tair10-symbols:MEE21UniGene:At.47485UniGene:At.61738UniProt:Q8L8C2
Coordinates (TAIR10) chr2:-:14563048..14564681
Molecular Weight (calculated) 31788.10 Da
IEP (calculated) 10.50
GRAVY (calculated) -0.87
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVKRQKKNR RTVRFFTVCY GFRQPYKVLC DGTFVHHLVT NEITPADTAV SELLGGPVKL FTTRCVIAEL EKLGKDFAES LEAAQTLNTA TCEHEEAKTA
101: DECLSEVIGV QNTEHFFLGT QDAEFRRKLQ QESIVPLVFG LRNILLIDQP SDFQRQSAKD SENKRLTMTD TEKKLLVKRT AKIIASNRKE ATIANEEWGM
201: PRVVSTKNGL GVKDRPQFKR NRAKGPNPLS CMKKKKENPQ SKSKADSNSN AQKEKKEGGS DTQKRSRKRS KKGKSGPERT E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)