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AT5G06350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G27010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YR7TeggNOG:KOG2149EMBL:CP002688EnsemblPlants:AT5G06350
EnsemblPlants:AT5G06350.1entrez:830523Gene3D:1.25.10.10GeneID:830523
Gramene:AT5G06350.1hmmpanther:PTHR16056hmmpanther:PTHR16056:SF2InParanoid:F4K3T5
InterPro:IPR011989InterPro:IPR016024InterPro:IPR024679KEGG:ath:AT5G06350
KO:K14827OMA:CQELAISPaxDb:F4K3T5Pfam:PF12333
PRIDE:F4K3T5ProteinModelPortal:F4K3T5Proteomes:UP000006548RefSeq:NP_196253.2
STRING:3702.AT5G06350.1SUPFAM:SSF48371TAIR:AT5G06350UniGene:At.7281
UniProt:F4K3T5
Coordinates (TAIR10) chr5:+:1938781..1944197
Molecular Weight (calculated) 99996.20 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.10
Length 877 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRSKAPAKK QQKKGIDFKK IKRKLGRKLP PPKNATNTEI KSKAIILPEQ SVAAEKSGLA TSKKGLTLKE LLPQTSHHNA KVRKDALYGI KDLFKNHPEE
101: LQSHKYAIIQ KLRERISDDD KLVRDVFYQL FDIDIFPLCK EDNQGLMVSL LMPYIFSAMA HSAIDVRLMA FKFFHLVVEF YPPTFSLDAE KILENYKDII
201: QKNHFYVEDK SKLKVALSGL SHCLSVLPCD ESDTKSQKKG PSQNETLLTY EQDATKDCVR YAHVYQRLKE VVAVLINCFQ DFIPLIHAPR GFDAHSFDCI
301: QHILRSIGYA IKFSIRRHKQ RQTAWRPASE EVTLMILDQD IASMLLKKLL GSFPLDPENN LYGKGDDKYF KLNSVLTEIF LEVSEWSHLP TDLSNRYLEF
401: IENTLLGKIT RSIRLRKDIH EKTLLALLPF LPKLILRVDR DWRDNLLEAF TITFSDCKPE SKLKLACIST VRDMIIPNGD ILYPNASDPT VHYYQVAWVN
501: KLPSLLNQLG NEHPVSTQVV LQLLLDLGRV GCLNASPTCE DDIRNFFSLC QGEGDVPGGP FASLPREAQE LALCFLYYFT TDKFSSPMMK AIVSCCLYPQ
601: LEPAVLYRIV EILHTAYRAG YIQITDHFSF LITLIARFKV VPEKLQSSIE CNERETYCGT FKEVTKLVCS CLSEMGDSSL VLQIVEKVLL EQIVLKPALD
701: NGCAILRMIC VLDSTPTTLS ERSVTTLSEF LPGYMINIVN CIPEDKENSY LYIQTCLYYL VPCYFLFNRS SKLTEQVLIR MRSMISENTK ALESVQDRES
801: GRNSLNMIQC IISVILLMHN DVKVRKIISS FKPEIDLILQ NVITLQSSRS TSLTVEGKHM MKIAGERLRI ASKSLLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)