AT5G18400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (TAIR:AT5G18362.1); Has 540 Blast hits to 539 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 186; Plants - 75; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6092955..6094566 | ||||||||
| Molecular Weight (calculated) | 29104.20 Da | ||||||||
| IEP (calculated) | 4.59 | ||||||||
| GRAVY (calculated) | -0.02 | ||||||||
| Length | 269 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNQKTVLAV TDDVVLPVSS VLAIMKELGK EVIESFDPLI ITQASTINQF PLDASSVEAV LAISKTSDFP SDKICGEFSR ILKPGGTVSV CKVLEGETGE 101: IQQTIQRRVT LAGFLEPQCL DLKSIKLSTF SLSFGIKAKK PSWKIGSSFA LKKPVTNLFK IDLDDDVDLI DEDSLLTEED LMKPQLPVAS GCETTKKACK 201: NCVCGRAEIE EKAVKLGLTE DQIENPQSSC GSCGLGDAFR CGTCPYKGLP PFKLGEKVTL SQNFLEADI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)