suba logo
AT3G11220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Paxneb protein-related
Curator
Summary (TAIR10)
A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.
Computational
Description (TAIR10)
ELONGATA 1 (ELO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, organ growth; LOCATED IN: Elongator holoenzyme complex; CONTAINS InterPro DOMAIN/s: Elongator complex protein 4 (InterPro:IPR008728); Has 319 Blast hits to 294 proteins in 144 species: Archae - 2; Bacteria - 2; Metazoa - 142; Fungi - 99; Plants - 52; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
EMBL:AC073395EMBL:AJ964957EMBL:AY062115EMBL:BT010161
EMBL:CP002686EnsemblPlants:AT3G11220EnsemblPlants:AT3G11220.1entrez:820292
Gene3D:3.40.50.300GeneID:820292Genevisible:Q9C778GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0006979
GO:GO:0007275GO:GO:0008284GO:GO:0009734GO:GO:0009737
GO:GO:0009738GO:GO:0010928GO:GO:0016746GO:GO:0031538
GO:GO:0033588GO:GO:0043609GO:GO:0071329GO:GO:2000024
hmmpanther:PTHR12896hmmpanther:PTHR12896:SF1HOGENOM:HOG000070580InParanoid:Q9C778
InterPro:IPR008728InterPro:IPR027417iPTMnet:Q9C778KEGG:ath:AT3G11220
KO:K11375PANTHER:PTHR12896Pfam:PF05625Pfam:Q9C778
PhylomeDB:Q9C778PRIDE:Q9C778PRO:PR:Q9C778ProteinModelPortal:Q9C778
Proteomes:UP000006548RefSeq:NP_001154606.1RefSeq:NP_566388.2SUPFAM:SSF52540
TAIR:AT3G11220tair10-symbols:ELO1UniGene:At.27198UniProt:Q9C778
Coordinates (TAIR10) chr3:-:3513830..3515990
Molecular Weight (calculated) 38733.40 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.25
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAPNVRSSS SFSRNISVVS SPQIPGLKSG PNGTAFISSG IRDLDRILGG GYPLGSLVMV MEDPEAPHHM DLLRTYMSQG LVNNQPLLYA SPSKDPKGFL
101: GTLPHPASSK EDKPTAPDPD QGESLRIAWQ YRKYLENQKN AIDDYSNDFD MRKPLERQFL SGRPIDCVSL LDSSDLSIAQ DHCATFLSKF PRNSSNIASI
201: GRIAIQSFCS PLCEYSEKES DMLSFIRLLK SMLMVSNAVA IVTFPPSLLS PSSSKRLQHM ADTLLSIKAI PDGDKELEKL LTGYKDINGF LNIHKVARIN
301: TQVPVILEAK TFSMSLKKRR FLALECLNQA PVDGSSGTSY GTSGSCSSKS GALDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)