AT3G11240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arginine-tRNA protein transferase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
arginine-tRNA protein transferase 2 (ATE2); FUNCTIONS IN: arginyltransferase activity; INVOLVED IN: regulation of seed germination, regulation of lipid catabolic process, protein arginylation, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: arginine-tRNA protein transferase 1 (TAIR:AT5G05700.1); Has 2270 Blast hits to 2031 proteins in 783 species: Archae - 0; Bacteria - 1438; Metazoa - 213; Fungi - 241; Plants - 48; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3518665..3521092 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68602.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSKKAKTKN EASSSRGGIG GESIVADCGR NKSTCGYCKS STRFSISHGL WTERLTVNDY QALLDSGWRR SGCYLYKPEM EKTCCPSYTI RLKASDFVPS 101: KEQQRVRRRI ERFLDGELDA KPSEQTEDQD VSFSREVSVS VKKSLGAAKR EKNNELEPIM KDLSEQIDNA VQKCIQSGEF PSNVQIPKAS VKKVFSAKRK 201: KLAEGSEDLL YTSNIAFPIV AAMKHTQTLE KGKNVEENRL SPEAVSEKLL SAMNKVGEFT GFSVKVSKGH INFLSATQVT SSDRNEGEES LCATTIKSSS 301: NKLHARKRKL EMHLKRSSFE PEEYELYKRY QMKVHNDKPE SISETSYKRF LVDTPLTEVP SSGYDDEEKI PLCGFGSFHQ QYRVDDRLIA VGVIDILPKC 401: LSSKYLFWDP DFASLSLGNY SALQEIDWVK QNQAHCSTLE YYYLGYYIHS CNKMRYKAAY RPSELLCPLR YQWVPFEVAK PLLDKKPYSV LSNISKVSSS 501: SSSPQASETL LESTSEHEDM EQGDTNDDDD EMYNSDEDSD SDSSSSRNRS DITNILISLN GPRLRYKDIP RFKNPVVQKQ LESMLVSYRK VVGAELSEIM 601: VYELR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)