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AT4G15850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA helicase 1
Curator
Summary (TAIR10)
plant DEAD box-like RNA helicase.
Computational
Description (TAIR10)
RNA helicase 1 (RH1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G16630.1); Has 38711 Blast hits to 38056 proteins in 2969 species: Archae - 603; Bacteria - 19125; Metazoa - 5736; Fungi - 4393; Plants - 2535; Viruses - 13; Other Eukaryotes - 6306 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1078-MONOMEREC:3.6.4.13eggNOG:ENOG410XRWMeggNOG:KOG0350
EMBL:AL161542EMBL:CP002687EMBL:Y11154EMBL:Y11187
EMBL:Z97339EnsemblPlants:AT4G15850EnsemblPlants:AT4G15850.1entrez:827266
Gene3D:3.40.50.300GeneID:827266Genevisible:Q7FGZ2GO:GO:0003723
GO:GO:0004004GO:GO:0005524GO:GO:0010501GO:GO:0017151
Gramene:AT4G15850.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF68HOGENOM:HOG000239572
InParanoid:Q7FGZ2InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR027417KEGG:ath:AT4G15850KO:K14807OMA:KLVCKSN
PaxDb:Q7FGZ2Pfam:PF00270Pfam:PF00271Pfam:Q7FGZ2
Pfscan:PS51192Pfscan:PS51194PIR:A71424PIR:E85175
PRIDE:Q7FGZ2PRO:PR:Q7FGZ2PROSITE:PS51192PROSITE:PS51194
ProteinModelPortal:Q7FGZ2Proteomes:UP000006548RefSeq:NP_193320.6SMART:SM00487
SMART:SM00490SMR:Q7FGZ2STRING:3702.AT4G15850.1SUPFAM:SSF52540
TAIR:AT4G15850tair10-symbols:ATRH1tair10-symbols:RH1UniGene:At.33
UniProt:Q7FGZ2
Coordinates (TAIR10) chr4:+:9001426..9004534
Molecular Weight (calculated) 57719.00 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.20
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)