AT1G27470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G07410.1); Has 9350 Blast hits to 6259 proteins in 471 species: Archae - 14; Bacteria - 2955; Metazoa - 2262; Fungi - 2287; Plants - 792; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9540368..9544218 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89787.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 810 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFEYRCSSID WKPSPVVALA TSADGSQVAA AREDGSLELW LVSPGASSWH CQLIIHGDPK SRISHLAWFG TGSKGSSSAR LFSSSIDGSI SEWDLFDLKQ 101: KVVLDSIGFS IWQIALAPIS IEAESKEAKL IQNGYLSEKS DDEEESGVED DSELDELDEK VEALDRHLAA ACDDGCVRIY YISESDKLTY YRSLPRVTGR 201: ALSVTWSADA QRIFSGSSDG LIRCWDANLC HEVYRITVGL GGLGNGSELC IWSLLSLRYG VLVSGDSTGS VQFWDSQHGT LLQAHSNHKG DVNALAASPS 301: HNRVFSAGAD GQVILYKLSG GTSRSQDFKP SSAQKWDYIG CVRAHTHDIR ALTVAVPISW EGSIPDRNAK VTSPKQRRKE PAGFSYHKWA HLGVPMLISA 401: GDDAKLYAYS VQEFTKFPPH DICPAPQRVP MQMVHNTVFN QTSLLLVQDS CSLDILRIHI SNDSSGRVST KPLVRVKSKD ARKIICSAIS NTGSLFAYSD 501: QVRPSLFELK KNKIGKNPWS ANRKRLPNLP FAHSMVFSCD CSRLIIAGHD RRIYIVDVGS MELLHSFTPR QEGQEGESPP HEPPITKLYT SSNDDWLAAI 601: NCFGDIYVFN LETQRQHWFI SRLDGASVAA AGFHPRDNNV IVISTSSNQV FALDVEAREL SKWSLLQTFC LPKSYQNFPG EVVGLSFSPS PCSSSVIIYS 701: SRAKCLIEFG KPAEQDEDTD TPCNLSEKLE GKLASISMKL GNGAQKRRLE EYQKESKSNK RKKFEMVTSK HPVLYLRHLS KSAILVIEKP WMEVIKNLDT 801: QPVHRHIFGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)