AT3G19370.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF869) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF869); LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT2G23360.1); Has 44099 Blast hits to 25548 proteins in 1425 species: Archae - 637; Bacteria - 4297; Metazoa - 22352; Fungi - 3568; Plants - 2188; Viruses - 105; Other Eukaryotes - 10952 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:6711046..6713494 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81552.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.99 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||
| Length | 704 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METNQWRSRK KIESAAETLQ VSSRRGRGQA RMVPPVSGVR SERARKSLSE KLETVALNSP KKDARVSLYG EKSVVDEIFL EDEEMGHETG LKNGESSPFC 101: GVSDKLLQRI ELLGRDHEAT RLDNNKFRSI ESMKKRQEES ACDDLVDMKT KIQTLAAENT QLKKSLVAKE ELAVSLQERK FQVESEFEAL MTRLDSTEKE 201: NAFLRYEYTV LEKDLQVKTE ETEHTRRSME LTHKQQLRNV NKIVELEAEC QRLRLLFRKK FPEKSISMRN EGEEKKMEMR RRNANKSDMM MRDEVQSRKL 301: KYDLLMEQIG NVRAENKNLM DIIMKKNIEI KDLSRGQKPL EASSFDIQSE SSVMSPCGSK EMKLLMDDFN EMEKLAIVCT EKDPRVDDEK EGSFDWIQVV 401: LSAITKQERI SKRGVKELLQ DIKIALGCMD ENDNVERKKG EEDPLCITWK SNNESGPMTK DEIKRHLGLT KSDKVEKIES DEKQELRKKL EESVEKIRNL 501: EAEMKTLREN KEKVEAEMET EKSMKEDLDT KLNITRANLN ETQKKLSSLE VEFDYRKSCC EELEGTCIEL QLQLESVETK KPTQRNKNGW DIATASVKLS 601: ECQETITSLR KQLRALSTTE TSSTIKFLHK RSSLRENIAE DDTNRVAQDD DGNRYNALIV YEPVKARGEK MEMVPRKKQG LGFLKKLLFR RKRVSSKKCL 701: ALTM |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)