AT1G47900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF869) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G19835.2); Has 79140 Blast hits to 41205 proteins in 2472 species: Archae - 1127; Bacteria - 12072; Metazoa - 37984; Fungi - 6739; Plants - 4292; Viruses - 211; Other Eukaryotes - 16715 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17647340..17651035 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118546.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||
| Length | 1054 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDRRSWPWKK KASDKSILVI DSAADASHSQ IDKEAIKKPK YVQISVEQYT HFTGLEEQIK SYDVQIKGYD VQVKTYENQV ESYEEQVKDF EEQIDAYDEK 0101: VHEYEEQVQK LNEDVEDLNE KLSVANEEIV TKEALVKQHS KVAEDAVSGW EKADAEALAL KNTLESVTLS KLTAEDRAAH LDGALKECMR QIRNLKKDHE 0201: VKLHDVALSK TKQIEKMTME FEKRMCDYEQ ELLRSAADSD ALSRTLQERS NMLVKVSEEK SRADAEIETL KSNLEMCERE IKSLKYEVHV VSKELEIRNE 0301: EKNMCIRSAE SANKQHLEGV KKIAKLEAEC QRLRSLVRKK LPGPAALAQM KLEVENLGRD SGDARQKRSP VKVSSPCKSP GGYSSTGSEF SLDNAQKFQK 0401: ENEFLTERLL AMEEETKMLK EALAKRNSEL LESRNLCAQS TSKLQSLEAQ LQQNNSQKSS LEVCPNLNTS NPSSSISVSE DGNDDSGSCS GSLSTNPSQQ 0501: IKKEKDMAAL ERVESVNSHV ELMDDFLEME KLACLPNLSS SNGSIDSKDG SGDQKSEMVI LDAHTDLEDS DRGSPAVMKF RSRLSKVLES VSPDADIQKI 0601: VGDIKCILQD VNACMDQEKP SEVHVHPEEV SDLCPEQNLV EDCHLAEQKL QSIHQDLKNA VSRIHDFVLL LRNEVKAGQD TSIEGNDFVE LIEGFSVTFN 0701: HVLSGDKSLD DFVSNLANVF NEAMERKVSF RGLASSEVET LSPDCIDKVA LPESKVVDKD SSQEIYQNGC VHNEPGVPCD ENRVSGYESD SKLQEIEELR 0801: SEKEKMAVDI EGLKCQLQES EQLLADIRSQ FDSAQRSNRL ADTQLRCMTE SYRSLESRAA DLEIDVNQLK EKIQKLENEL EDEKCNHQEA ILRCHELEEH 0901: IQRHRNTSLV AEDDEEADIK SKQERELSAA AEKLAECQET IFVLGKQLKS FRPQPEQMRS PQTRNESYSE EEELGTTTTS VPKNYAVVDE GDSVNEVPRF 1001: MESPKCPSDS ETSDTTTSPS RVGSRLSRSG SSTNATPEKA SRGISRFFSS KSGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)