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AT1G56010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 1
Curator
Summary (TAIR10)
Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)
Computational
Description (TAIR10)
NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2736 Blast hits to 2731 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2736; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIHIeggNOG:ENOG410YDRKEMBL:EU550635EMBL:EU550636
EMBL:EU550637EMBL:EU550638EMBL:EU550639EMBL:EU550640
EMBL:EU550641EMBL:EU550642EMBL:EU550643EMBL:EU550644
EMBL:EU550645EMBL:EU550646EMBL:EU550647EMBL:EU550648
EMBL:EU550649EMBL:EU550650EMBL:EU550651EMBL:EU550652
EMBL:EU550653EMBL:EU550654EMBL:EU550655EMBL:EU550656
EMBL:EU550657EMBL:EU550658EnsemblPlants:AT1G56010EnsemblPlants:AT1G56010.1
entrez:842052ExpressionAtlas:B2CUT4hmmpanther:PTHR31744hmmpanther:PTHR31744:SF5
HOGENOM:HOG000237406PaxDb:B2CUT4Pfam:PF02365Pfscan:PS51005
STRING:3702.AT1G56010.2tair10-symbols:anac021tair10-symbols:NAC1UniProt:B2CUT4
Coordinates (TAIR10) chr1:-:20946852..20947727
Molecular Weight (calculated) 28654.80 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.54
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RTILRKGKLV GMRKTLVFYQ GRAPRGRKTD WVMHEFRLQG SHHPPNHSLS SPKEDWVLCR
101: VFHKNTEGVI CRDNMGSCFD ETASASLPPL MDPYINFDQE PSSYLSDDHH YIINEHVPCF SNLSQNQTLN SNLTNSVSEL KIPCKNPNPL FTGGSASATL
201: TGLDSFCSSD QMVLRALLSQ LTKIDGSLGP KESQSYGEGS SESLLTDIGI PSTVWNC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)