AT5G59780.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : myb domain protein 59 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative transcription factor (MYB59). | ||||||||||||
| Computational Description (TAIR10) |
myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.3); Has 5767 Blast hits to 5764 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 94; Plants - 4827; Viruses - 3; Other Eukaryotes - 535 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr5:-:24082425..24083044 | ||||||||||||
| Molecular Weight (calculated) | 19482.60 Da | ||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||
| Length | 170 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKAQEK KRPMSPTSSS SNCCSSSMTT TTSQDTGGSN GKMNQECEDG YYSMDDIWRE 101: IDQSGANVIK PVKDNYYSEQ SCYLNFPPLA SPTWESSLES IWNMDADESK MSSFAIDQFP LSFEHGSGRL |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)