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AT4G24470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA-type zinc finger protein with TIFY domain
Curator
Summary (TAIR10)
ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.
Computational
Description (TAIR10)
TIFY1; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 1524 Blast hits to 1503 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 686; Plants - 776; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB035310EMBL:AB035311
EMBL:AK229337EMBL:AL078637EMBL:AL161561EMBL:AY086038
EMBL:CP002687EnsemblPlants:AT4G24470EnsemblPlants:AT4G24470.1EnsemblPlants:AT4G24470.2
entrez:828549ExpressionAtlas:Q9LRH6Gene3D:3.30.50.10GeneID:828549
Genevisible:Q9LRH6GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0008270GO:GO:0043565hmmpanther:PTHR10071hmmpanther:PTHR10071:SF192
HOGENOM:HOG000238783InParanoid:Q9LRH6InterPro:IPR000679InterPro:IPR010399
InterPro:IPR010402InterPro:IPR013088PaxDb:Q9LRH6Pfam:PF00320
Pfam:PF06200Pfam:PF06203Pfam:Q9LRH6Pfscan:PS50114
Pfscan:PS51017Pfscan:PS51320PhylomeDB:Q9LRH6PIR:JC7336
PIR:T09910PRIDE:Q9LRH6PRO:PR:Q9LRH6PROSITE:PS00344
PROSITE:PS50114PROSITE:PS51017PROSITE:PS51320ProteinModelPortal:Q9LRH6
Proteomes:UP000006548RefSeq:NP_194178.1RefSeq:NP_849435.1scanprosite:PS00344
SMART:SM00401SMART:SM00979SMR:Q9LRH6STRING:3702.AT4G24470.3
SUPFAM:SSF57716TAIR:AT4G24470tair10-symbols:GATA25tair10-symbols:TIFY1
tair10-symbols:ZIMUniGene:At.1650UniProt:Q9LRH6
Coordinates (TAIR10) chr4:+:12645785..12647734
Molecular Weight (calculated) 33262.80 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.56
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)