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AT3G43430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G20885.1); Has 6030 Blast hits to 6013 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1395; Fungi - 381; Plants - 3597; Viruses - 16; Other Eukaryotes - 641 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK175367EMBL:AL138664
EMBL:CP002686EnsemblPlants:AT3G43430EnsemblPlants:AT3G43430.1entrez:823423
Gene3D:3.30.40.10GeneID:823423GO:GO:0008270GO:GO:0016021
Gramene:AT3G43430.1hmmpanther:PTHR14155HOGENOM:HOG000029121InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT3G43430OMA:ISHVLYKPfam:PF13639
Pfscan:PS50089PhylomeDB:Q9M176PIR:T47385PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_189929.1SMART:SM00184SMR:Q9M176
STRING:3702.AT3G43430.1SUPFAM:SSF57850TAIR:AT3G43430TMHMM:TMhelix
UniGene:At.36274UniProt:Q9M176
Coordinates (TAIR10) chr3:-:15354758..15355261
Molecular Weight (calculated) 19002.40 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.10
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFFIEDTSL IISHVLYKTA LIITVLRWIF AWILRYRSRS SSSSSSQSSS SPSISSQTIK ESLAVSAFRD AVERSPAAIN DMCAVCLGDL EDEDEIRELR
101: NCTHVFHRDC IDRWLDYECC GGDDDNHRTC PLCRTPLLPS FTDYSTVTQT SWAVERLLYL FGDDLLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)