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AT4G18340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G30080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G18340-MONOMERCAZy:GH17eggNOG:ENOG410IIB9eggNOG:ENOG410Y9S4
EMBL:AY120764EMBL:BT001232EMBL:CP002687EnsemblPlants:AT4G18340
EnsemblPlants:AT4G18340.1entrez:827561Gene3D:3.20.20.80GeneID:827561
GO:GO:0004553GO:GO:0005975Gramene:AT4G18340.1hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF63HOGENOM:HOG000238220IntAct:Q8L837InterPro:IPR000490
InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT4G18340OMA:PAMINIH
Pfam:PF00332PhylomeDB:Q8L837Proteomes:UP000006548RefSeq:NP_193568.2
SMR:Q8L837STRING:3702.AT4G18340.1SUPFAM:SSF51445TAIR:AT4G18340
TMHMM:TMhelixUniGene:At.32918UniProt:Q8L837
Coordinates (TAIR10) chr4:-:10130245..10132019
Molecular Weight (calculated) 44164.00 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.05
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSRTFTRHS SLIHVFLLLS LVFSGNILQT VTSLGINYGQ VGNNLPSPDK VINLLRSLRI TKTRIYDTNP QILSAFANSN IEIIVTIENQ VLPLLQDPQQ
101: ATQWVDSHIK PYVPATRITG IMVGNELFTD DDSSLIGYMM PAIINIHKAL VQLGLDRYIQ VSSPSSLAVL GESYPPSAGS FKPEVSSVMQ QLLDFLEATK
201: SPFWINAYPY FAYKDNPQEI PVDYVLFNRN IGMTDPNTRL HYDNMMYAQV DAVAFAAAKL GYRNIEVRVA ETGWPSKGDV GEIGASPVNA ATYNRNLMMR
301: QFAGEGTPAR RNARLDVYIF ALFNEDMKPG PTSEKNYGIF QPDGSLAYNL GFSTMSTTTA NSESVTYSSS ATKAKRSLEY WTILILAMVQ VVMLRLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)