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AT2G47560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2615; Fungi - 944; Plants - 5266; Viruses - 125; Other Eukaryotes - 1525 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC002535EMBL:BT003983
EMBL:BT005009EMBL:CP002685EnsemblPlants:AT2G47560EnsemblPlants:AT2G47560.1
entrez:819369Gene3D:3.30.40.10GeneID:819369Genevisible:O22255
GO:GO:0008270GO:GO:0016021GO:GO:0016567Gramene:AT2G47560.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF117HOGENOM:HOG000034169InParanoid:O22255
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT2G47560OMA:AVIMILC
PaxDb:O22255Pfam:O22255Pfam:PF13639Pfscan:PS50089
PhylomeDB:O22255PIR:T00428PRO:PR:O22255PROSITE:PS50089
ProteinModelPortal:O22255Proteomes:UP000006548RefSeq:NP_182278.1SMART:SM00184
SMR:O22255STRING:3702.AT2G47560.1SUPFAM:SSF57850TAIR:AT2G47560
TMHMM:TMhelixUniGene:At.12430UniGene:At.66383UniPathway:UPA00143
UniProt:O22255
Coordinates (TAIR10) chr2:-:19511934..19512617
Molecular Weight (calculated) 25475.50 Da
IEP (calculated) 7.41
GRAVY (calculated) -0.22
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIGEESTKP IWGSVSHTSS GYALNGKIML SSVIVLFVAV IMILCFHSYA RWLFRRHNRR IRRRIRSHLR TLSASPRDQA LDQAVLDKIP IFVYSSKNPP
101: PPEEKEECSV CLSEFEEEDE GRLLPKCGHS FHVDCIDTWF RSRSTCPLCR APVQPPFQVI ETGSSSSSSP LTFPTEGCER EPIDLAGIIV DISREVEFEG
201: SNPGLPIENG SKFPGSRVLS LKRLWSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)