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AT3G62690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AtL5
Curator
Summary (TAIR10)
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational
Description (TAIR10)
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK228355EnsemblPlants:AT3G62690
EnsemblPlants:AT3G62690.1entrez:825443ExpressionAtlas:Q0WRF5Gene3D:3.30.40.10
GeneID:825443GO:GO:0008270GO:GO:0016021Gramene:AT3G62690.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF117InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT3G62690OMA:VYSVKTHPaxDb:Q0WRF5Pfam:PF13639
Pfam:Q9LZJ6Pfscan:PS50089PhylomeDB:Q0WRF5PROSITE:PS50089
ProteinModelPortal:Q0WRF5RefSeq:NP_191828.1SMART:SM00184SMR:Q0WRF5
STRING:3702.AT3G62690.1SUPFAM:SSF57850TAIR:AT3G62690tair10-symbols:ATL5
TMHMM:TMhelixUniGene:At.4826UniProt:Q0WRF5UniProt:Q9LZJ6
Coordinates (TAIR10) chr3:-:23185829..23186602
Molecular Weight (calculated) 28593.90 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.24
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLFDSSKT LWGNMNHGSS RYSLNGKIML ASVIILFVAV ILILCFHSYA RWLFRRQNRR IRRRISAHLR SLAAARDPTQ SSSSLSPLDP TVLEKIPIFV
101: YSVKTHESPL EECSVCLSEF EEDDEGRVLP KCGHVFHVDC IDTWFRSRSS CPLCRAPVQP AQPVTEPEPV AAVFPSVKPI EDTEAGSSSS SDESESSTPS
201: SSSGSPVRFP MEACEREPID LVGIIVEIPR EFQDSNSDLP ADNGSNRRAS LKRLWII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)