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AT5G37660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata-located protein 7
Curator
Summary (TAIR10)
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational
Description (TAIR10)
plasmodesmata-located protein 7 (PDLP7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 6 (TAIR:AT2G01660.1); Has 1355 Blast hits to 1281 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G37660EnsemblPlants:AT5G37660.1entrez:833744hmmpanther:PTHR32080
hmmpanther:PTHR32080:SF5Pfam:PF01657Pfscan:PS51473tair10-symbols:PDLP7
TMHMM:TMhelix
Coordinates (TAIR10) chr5:+:14959842..14961379
Molecular Weight (calculated) 30458.50 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.16
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MPMAKLRNII KTLSIFFFLI AATAPSLSSA TSATDTFVFG GCSQQKFSPA SAYESNLNSL LTSLVNSATY SSYNNFTIMG SSSSDTARGL FQCRGDLSMP
101: DCATCVARAV SQVGPLCPFT CGGALQLAGC YIKYDNISFL GQEDKTVVLK KCGSSEGYNT DGISRRDAVL TELVNGGGYF RAGGSGDVQG MGQCVGDLTV
201: SECQDCLGTA IGRLKNDCGT AVFGDMFLAK CYARYSTDGA QHYAKSHNYK TNYGGEKTFA IIIGLLAAVV LLIIFLLFLR GVCSRGGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)