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AT1G08160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G22870.1); Has 611 Blast hits to 611 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ7SeggNOG:ENOG410YPRUEMBL:AC011438EMBL:AC026875
EMBL:AY065386EMBL:AY091277EMBL:CP002684EnsemblPlants:AT1G08160
EnsemblPlants:AT1G08160.1entrez:837337GeneID:837337GO:GO:0016021
Gramene:AT1G08160.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF5HOGENOM:HOG000150654
InterPro:IPR004864KEGG:ath:AT1G08160OMA:TIEMEVYPaxDb:Q8VZ13
Pfam:PF03168Pfam:Q8VZ13PhylomeDB:Q8VZ13PIR:A86216
PRIDE:Q8VZ13PRO:PR:Q8VZ13ProteinModelPortal:Q8VZ13Proteomes:UP000006548
RefSeq:NP_849612.1STRING:3702.AT1G08160.1TAIR:AT1G08160TMHMM:TMhelix
UniGene:At.47247UniProt:Q8VZ13
Coordinates (TAIR10) chr1:-:2559672..2560337
Molecular Weight (calculated) 25159.80 Da
IEP (calculated) 11.23
GRAVY (calculated) -0.30
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPPNPAHQP ARRTQPQLQP QSQPRAQPLP GRRMNPVLCI IVALVLLGLL VGLAILITYL TLRPKRLIYT VEAASVQEFA IGNNDDHINA KFSYVIKSYN
101: PEKHVSVRYH SMRISTAHHN QSVAHKNISP FKQRPKNETR IETQLVSHNV ALSKFNARDL RAEKSKGTIE MEVYITARVS YKTWIFRSRR RTLKAVCTPV
201: MINVTSSSLD GFQRVLCKTR L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)