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AT1G29520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.783
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AWPM-19-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW2YeggNOG:ENOG410YG9FEMBL:AC068667EMBL:AY074324
EMBL:AY096597EMBL:CP002684EnsemblPlants:AT1G29520EnsemblPlants:AT1G29520.1
entrez:839829GeneID:839829GO:GO:0016021Gramene:AT1G29520.1
hmmpanther:PTHR33294HOGENOM:HOG000237713InterPro:IPR008390KEGG:ath:AT1G29520
OMA:HIRHWNIPfam:PF05512PhylomeDB:Q9C7P9PIR:B86418
Proteomes:UP000006548RefSeq:NP_174245.1STRING:3702.AT1G29520.1TAIR:AT1G29520
TMHMM:TMhelixUniGene:At.40728UniGene:At.70532UniProt:Q9C7P9
Coordinates (TAIR10) chr1:+:10323735..10324525
Molecular Weight (calculated) 16813.90 Da
IEP (calculated) 9.18
GRAVY (calculated) 0.77
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGEQIKPVA SGLLVLNFCM YVIVLGIGGW AMNRAIDHGF EVGPNLELPA HFSPIYFPMG NAATGFFVIF ALLAGVVGAA STISGLSHIR SWTVGSLPAA
101: ATAATIAWTL TVLAMGFAWK EIELQGRNAK LRTMEAFLII LSVTQLIYIA AVHGVRRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)