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AT2G41300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : strictosidine synthase-like 1
Curator
Summary (TAIR10)
Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational
Description (TAIR10)
strictosidine synthase-like 1 (SSL1); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G57010.1); Has 958 Blast hits to 946 proteins in 182 species: Archae - 1; Bacteria - 181; Metazoa - 221; Fungi - 0; Plants - 461; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1911-MONOMEReggNOG:COG3386eggNOG:KOG1520EMBL:AC005662
EMBL:CP002685EnsemblPlants:AT2G41300EnsemblPlants:AT2G41300.1entrez:818729
Gene3D:2.120.10.30GeneID:818729Genevisible:F4IJZ6GO:GO:0005774
GO:GO:0005783GO:GO:0009058GO:GO:0016788Gramene:AT2G41300.1
hmmpanther:PTHR10426hmmpanther:PTHR10426:SF24HOGENOM:HOG000223915InParanoid:F4IJZ6
InterPro:IPR004141InterPro:IPR011042InterPro:IPR018119KEGG:ath:AT2G41300
OMA:VEPACGRPANTHER:PTHR10426PaxDb:F4IJZ6Pfam:F4IJZ6
Pfam:PF03088PIR:B84840PRIDE:F4IJZ6PRO:PR:F4IJZ6
ProteinModelPortal:F4IJZ6Proteomes:UP000006548RefSeq:NP_181662.3STRING:3702.AT2G41300.1
SUPFAM:SSF63829TAIR:AT2G41300tair10-symbols:SSL1UniGene:At.42851
UniProt:F4IJZ6
Coordinates (TAIR10) chr2:-:17214312..17216292
Molecular Weight (calculated) 44393.80 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.40
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)