AT5G48060.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.537 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT5G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:19475296..19478878 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118805.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 1036 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRNTTKLVVH VVDAQYLMPR DGQGSASPFV EVDFLNQLSK TRTVPKSLNP VWNQKLYFDY DQSVINQHNQ HIEVSVYHER RPIPGRSFLG RVKISLCNIV 0101: YKDDQVYQRF TLEKKWLLSS VKGEIGLKFY ISSSEEDQTF PLPSKPYTSP TQASASGTEE DTADSETEDS LKSFASAEEE DLADSVSECV EGKKSEEVKE 0201: PVQKLHRQEV FARPAPMQSI RLRSRENPHE AQKPMSRGAN QLHPQNPNHL QSYGDTDLDD FKVKDMNLDL GERWPNPNAG ERFTGTYDLV EQMFYLYVRV 0301: VKAKELPPGS ITGGCDPYVE VKLGNYKGRT KIFDRKTTIP EWNQVFAFTK ERIQSSVLEV FVKDKETLGR DDILGKVVFD LNEIPTRVPP NSPLAPQWYR 0401: LEDWRGEGKV VRGEIMLAVW MGTQADEAFP EAWHADSASV HGEGVFNIRS KVYVSPKLWY LRVNVIEAQD MIPSDRNRLP DVFVKASVGM QTLKTSICSI 0501: KTTNPLWKED LVFVVAEPFE EQLVISVEDR VHTSKDEVIG KITLPMNVFE KRLDHRPVHS RWFNLDKYGT GVLEPDARRK EHKFSSRIHL RICLEGGYHV 0601: MDESTMYISD TRPTARQLWK QPVGMLEIGI LGANGLVPMK LKDGRGSTNA YCVAKYGQKW VRTRTILDTL SPRWNEQYTW EVYDPCTVIT LGVFDNSHLG 0701: SAQSGTADSR DARIGKVRIR LSTLEAHKIY THSFPLLVLQ PHGLKKTGDL QISVRFTTLS LANIIYNYGH PLLPKMHYLF PFTVNQVDGL RYQAMNIVST 0801: RLGRAEPPLR KEVVEYMLDV DSHLWSMRRS KANFFRIMSL LSGYFLVGKW LEDVCNWRYP VTSVLVNVLF FILVMYPELI LPTMFLYMFF IGLWNFRSRP 0901: RHPPHMDMKL SWAEAVGPDE LDEEFDTFPT SRSQELVRLR YDRLRSVAGR IQTVVGDIAA QGERIQSLLS WRDPRATSLF ILFCLAASVV LYAMPFKAIA 1001: LASGLYYLRH PKFRSKLPSL PSNFFKRLPS STDSLL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)