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AT1G29380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding X8 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G30933.1); Has 79591 Blast hits to 28935 proteins in 1734 species: Archae - 133; Bacteria - 28582; Metazoa - 23109; Fungi - 4542; Plants - 9902; Viruses - 1060; Other Eukaryotes - 12263 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43eggNOG:ENOG410IYZYeggNOG:ENOG41115QTEMBL:AK221467
EMBL:AY648309EMBL:AY773818EMBL:CP002684EnsemblPlants:AT1G29380
EnsemblPlants:AT1G29380.1entrez:839813GeneID:839813Gramene:AT1G29380.1
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF127HOGENOM:HOG000029140InterPro:IPR012946
KEGG:ath:AT1G29380OMA:TYPPPITPfam:PF07983PhylomeDB:Q6DST9
Proteomes:UP000006548RefSeq:NP_174231.2SMART:SM00768SMR:Q6DST9
TAIR:AT1G29380UniGene:At.50785UniGene:At.68810UniProt:Q6DST9
Coordinates (TAIR10) chr1:+:10284209..10285671
Molecular Weight (calculated) 30689.50 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.21
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHRIAPRCF STIMLLCLLY TSPLDVIAQG QGGQGDIPVV NPTAPGGSTT TPTITQPSPP SLTFPGPTTP TGGYPPLDGT TPTGGYPPLY GTTPPGGGDV
101: GGGGGGYGGG TPGGGGGGGG DTGAGAGGGG YGGGGDTGAG GGVGSGQWCI AKANASPTSL QVALDYACGY GGADCGQIQQ GAACYEPNTI RDHASFAFNS
201: YYQKHPGSDS CNFGGAAQLT STDPSKGSCH FSSSSGTVST SPPSQMSPPD FSSPPSSTYP PPITTPTTGI TGSGPPFGVA EPTGLPNSAT SVSHSLLSIF
301: TAVGILMPLL RENYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)