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AT5G20970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.461
cytosol 0.419
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT2G27140.1); Has 958 Blast hits to 958 proteins in 129 species: Archae - 8; Bacteria - 64; Metazoa - 1; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:CP002688EnsemblPlants:AT5G20970
EnsemblPlants:AT5G20970.1entrez:832222Gene3D:2.60.40.790GeneID:832222
GO:GO:0016021Gramene:AT5G20970.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF156
InParanoid:F4K6X6InterPro:IPR002068InterPro:IPR008978InterPro:IPR031107
KEGG:ath:AT5G20970KO:K13993ncoils:CoilOMA:WIRFHQE
PANTHER:PTHR11527PaxDb:F4K6X6Pfam:PF00011Pfscan:PS01031
PhylomeDB:F4K6X6PRIDE:F4K6X6PROSITE:PS01031ProteinModelPortal:F4K6X6
Proteomes:UP000006548RefSeq:NP_197597.1STRING:3702.AT5G20970.1SUPFAM:SSF49764
TAIR:AT5G20970TMHMM:TMhelixUniGene:At.31122UniGene:At.31123
UniProt:F4K6X6
Coordinates (TAIR10) chr5:+:7123132..7124001
Molecular Weight (calculated) 28132.80 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.80
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MANFGIERVY QEFEPATRWT SEPDAEVLVA DLPGFKKEQL KVSVTATRKL RLTGERPTGG NKWIRFHQEI PVPLTVDIDS VSAMFKDNKL YIRHPKLKTE
101: IPQTKPPTPV IMKPHDQHER KQGQGPKAMV EKPSGGKTDQ LKHDAQQLKH DAQQLKHDAQ QKAREVVQSG KNKLTGEPKG PLSSKDDEKD KVGAKWFEKY
201: KEATGNVVKE AKNKRQLLCN LAASVSLVLL ILLYARNAVR SSLVWKSEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)