AT3G10680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HSP20-like chaperones superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G04890.1); Has 10151 Blast hits to 7022 proteins in 776 species: Archae - 41; Bacteria - 1142; Metazoa - 3661; Fungi - 700; Plants - 785; Viruses - 49; Other Eukaryotes - 3773 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:3337773..3339345 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54199.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||
| Length | 490 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAIFKRPRP GGGRHPPPLA PTVSSFKPRA QWTNSGSSIF LYVNLPGFYR DQIEIKKDER TRTVQIQGQR PLSAQTKARF SEAYRVPDTC DMTKLSTSFS 101: HGLLTIEFPA IVEANKQEKA VQDQEKIGQR SNQEKSGGPG PNGSTLGRKK ALEEEKQVGT SQEKTTPTLN EEAPKTYKSV VEGKRAVPTG SQEKSEAKVK 201: AREAIPSLGG RERAKEEKVV ERKEAAHIVQ QKIGDKLKEE EAKSTPTLGG SLKPKVQAKE EKVIERKKDD DISQLKTGQK VKEKEISRTP TIDARVESKE 301: HAKVVEKKED GEIGQKLEGG RINLGPKKED KFTKPVVGDE ARRIEKNVAQ RNQAEPKLKT KEGDERIKLD VDDGVRNKQD ENNEMVGDMV SEGEIQDRVE 401: QKKIDEAGLA KDRGDLKDNA EVVEPETGPL LVKEGQKKSD MDPPLAVGGR GMGEEESRTY DIPLVNVGVA ALVIMGFGAY VFVPLVKYFS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)