suba logo
AT5G25370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.338
golgi 0.270
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D alpha 3
Curator
Summary (TAIR10)
member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.
Computational
Description (TAIR10)
phospholipase D alpha 3 (PLDALPHA3); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to water deprivation, response to salt stress, response to abscisic acid stimulus, membrane lipid catabolic process; LOCATED IN: membrane; EXPRESSED IN: leaf apex, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 1 (TAIR:AT3G15730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G25370-MONOMEREC:3.1.4.4eggNOG:COG1502eggNOG:KOG1329
EMBL:AC006258EMBL:CP002688EnsemblPlants:AT5G25370EnsemblPlants:AT5G25370.1
entrez:832609Gene3D:2.60.40.150GeneID:832609Genevisible:P58766
GO:GO:0004630GO:GO:0005509GO:GO:0005737GO:GO:0009414
GO:GO:0009651GO:GO:0009737GO:GO:0016020GO:GO:0046466
GO:GO:0046470GO:GO:0070290Gramene:AT5G25370.1gramene_pathway:3.1.4.4
gramene_pathway:LIPASYN-PWYgramene_pathway:PWY-3561hmmpanther:PTHR18896hmmpanther:PTHR18896:SF11
HOGENOM:HOG000240112InParanoid:P58766InterPro:IPR000008InterPro:IPR001736
InterPro:IPR011402InterPro:IPR015679InterPro:IPR024632KEGG:00564+3.1.4.4
KEGG:00565+3.1.4.4KEGG:ath:AT5G25370KO:K01115OMA:KIYRIDK
PANTHER:PTHR18896PaxDb:P58766Pfam:P58766Pfam:PF00168
Pfam:PF00614Pfam:PF12357Pfscan:PS50035PhylomeDB:P58766
PIRSF:PIRSF036470PRIDE:P58766PRO:PR:P58766PROSITE:PS50035
ProteinModelPortal:P58766Proteomes:UP000006548RefSeq:NP_197919.1SMART:SM00155
SMART:SM00239SMR:P58766STRING:3702.AT5G25370.1SUPFAM:SSF49562
SUPFAM:SSF56024TAIR:AT5G25370tair10-symbols:PLDALPHA3UniGene:At.54992
UniProt:P58766
Coordinates (TAIR10) chr5:-:8804240..8807547
Molecular Weight (calculated) 93367.40 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.41
Length 820 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEQLLLHGT LEVKIYRIDK LHQRSRFNLC GKGNKEPTGK KTQSQIKRLT DSCTSLFGGH LYATIDLDRS RVARTMMRRH PKWLQSFHVY TAHSISKIIF
101: TVKEDEPVSA SLIGRAYLPV TEVITGQPID RWLDILDENR RPIQGGSKLH VRVKFTHVTQ DVNWNKGIIL PSFNGVPNAY FNQREGCKVT LYQDAHVLNE
201: YPDVTLTGGQ VIYKHHRCWE EIFDAIWEAK HLIYIAGWSV NTDVTLVRDP KRTRPGGDLK LGELLKKKAE ENVTVLMLVW DDRTSHEVFK RDGLMMTHDQ
301: ETYDYFKNTK VRCVLCPRNP DNGDSIVQGF EVATMFTHHQ KTIVVDSEVD GSLTKRRIVS FLGGIDLCDG RYDTVEHPLF GTLNSVHAND FHQPNFDGAS
401: IKKGGPREPW HDIHCKLDGP AAWDVLYNFE QRWMKQGSGR RYLISMAQLA EITVPPLPIV QPDNEEGWTV QVFRSIDDGA VEGFPEDPRE AASIGLISGK
501: DNVIERSIQD AYVNAIRRAK NFIYIENQYF LGSSFGWNSR DINLNEINAL QLIPKEISLK IVSKIEAGER FSVYIVIPLW PEGKPGSASV QAILDWQRRT
601: MEMMYTDIII ALRKKGLDAN PRDYLTFFCL GNREKGKVGE YLPPEKPEAN SDYARAQESR RFMIYVHSKM MIVDDEYIII GSANINQRSM DGGRDTEIAM
701: GAYQPSHLLS TNNMRPVGQI FSFRISLWLE HLRVTTNAFQ CPESEECIRM VNATADELWG LYSAQEYPRN DDLPGHLLSY PISIGSNGEV TNLAGTEFFP
801: DTNAKVVGEK SNYLPPILTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)