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AT1G09460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding X8 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding X8 domain superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G30933.1); Has 28400 Blast hits to 14800 proteins in 1032 species: Archae - 269; Bacteria - 5437; Metazoa - 8038; Fungi - 2740; Plants - 5953; Viruses - 1223; Other Eukaryotes - 4740 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEF6eggNOG:ENOG410Y19YEMBL:CP002684EnsemblPlants:AT1G09460
EnsemblPlants:AT1G09460.1entrez:837469GeneID:837469Gramene:AT1G09460.1
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF118InParanoid:F4I0Z2InterPro:IPR012946
KEGG:ath:AT1G09460ncoils:CoilOMA:NCYSPISPaxDb:F4I0Z2
Pfam:PF07983ProteinModelPortal:F4I0Z2Proteomes:UP000006548RefSeq:NP_172417.2
SMART:SM00768SMR:F4I0Z2TAIR:AT1G09460TCDB:1.I.2.1.1
TMHMM:TMhelixUniGene:At.44972UniGene:At.51536UniProt:F4I0Z2
Coordinates (TAIR10) chr1:+:3053901..3055090
Molecular Weight (calculated) 33993.00 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.04
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKQSYFFVF TFLFLSLLSY CSSTTTHHDV LNPPTVFPTN PTTTPTATFP PVTITPTNPA TTVPIVPPVT TIPPPTLTPP PVITIPPPTL TPPVTNPVTN
101: PVTQYPPTQP SGTVPVPVPV VAPPVVSNSP SVSGQSWCVA KPGASQVSLQ QALDYACGIA DCSQLQQGGN CYSPISLQSH ASFAFNSYYQ KNPSPQSCDF
201: GGAASLVNTN PSTGSCIYQT GSSTSTPMTA GTTTPTPSTQ TVNQPPVTST PIIPTGGGII GVGTPPAIFN PANPTSNTLN NPSSGGLAGG YGFDGSPNEN
301: NPTSSDSTHL KIHFGHAMVA TLILHAVLFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)