AT5G66050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Wound-responsive family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Wound-responsive family protein (TAIR:AT1G19660.2); Has 576 Blast hits to 576 proteins in 231 species: Archae - 17; Bacteria - 411; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26412333..26414428 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37221.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 340 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPGVAFSCVP ASDLGIFISE STTFSRSISA SLSSSSSSPS SFRCCTPLNL KSLRSHRRPK ISHICCDGSS ISGSGLGDPD LEFLQASVLV AETSMHYKMR 101: RHGFRQDSMW QTSRPLPPFS IRASESRVGV LPIGLGFLRQ FKQPTIFLKI SCDGDYLLPV IVGDAAVEKL LDVPLQGHTE ECPDQFQFVS AVVDKLGYEV 201: KMVKLTGRIV NTYYASLCLG KPGDIEAICI DSRPSDAINV ARACQAPIYV NKAIVLEEAI KIGYGGRPQS AKPVFNVILD SAPDGPDPLS EELKLVRNMD 301: LASKEERYID AAMWRDRLKN LQNSSSVVYN KGVETPESYE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)