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AT4G29230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 75
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 75 (NAC075); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 99 (TAIR:AT5G56620.1); Has 3052 Blast hits to 2928 proteins in 176 species: Archae - 2; Bacteria - 22; Metazoa - 475; Fungi - 52; Plants - 2293; Viruses - 3; Other Eukaryotes - 205 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHN2eggNOG:ENOG410YHV1EMBL:AL161574EMBL:CP002687
EnsemblPlants:AT4G29230EnsemblPlants:AT4G29230.1entrez:829044GeneID:829044
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0044212
Gramene:AT4G29230.1hmmpanther:PTHR31079hmmpanther:PTHR31079:SF3HOGENOM:HOG000238154
InterPro:IPR003441KEGG:ath:AT4G29230OMA:CSWSSDRPfam:PF02365
Pfscan:PS51005PhylomeDB:Q9M0F8PIR:T13434PROSITE:PS51005
Proteomes:UP000006548RefSeq:NP_194652.1SMR:Q9M0F8STRING:3702.AT4G29230.1
SUPFAM:SSF101941TAIR:AT4G29230tair10-symbols:anac075tair10-symbols:NAC075
UniGene:At.31945UniProt:Q9M0F8
Coordinates (TAIR10) chr4:+:14410338..14414956
Molecular Weight (calculated) 54875.60 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.87
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKSNPAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPQDWVGLPA GVKFDPTDQE LIEHLEAKVL AKDFKSHPLI DEFIPTIEGE DGICYTHPEK
101: LPGVTRDGLS RHFFHRPSKA YTTGTRKRRK IQTECDNNLQ GSSSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK NRKPEKTNWV MHQYHLGTHE
201: EEKEGELVVS KIFYQTQPRQ CNWSSSTSSL NAIGGGGGEA SSGGGGGEYH MRRDSGTTSG GSCSSSREII NVNPPNRSDE IGGVGGGVMA VAAAAAAVAA
301: GLPSYAMDQL SFVPFMKSFD EVARRETPQT GHATCEDVMA EQHRHRHQPS SSTSHHMAHD HHHHHHQQQQ QRHHAFNISQ PTHPISTIIS PSTSLHHASI
401: NILDDNPYHV HRILLPNENY QTQQQLRQEG EEEHNDGKMG GRSASGLEEL IMGCTSSTTH HDVKDGSSSM GNQQEAEWLK YSTFWPAPDS SDNQDHHG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)