suba logo
AT2G40370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : laccase 5
Curator
Summary (TAIR10)
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational
Description (TAIR10)
laccase 5 (LAC5); FUNCTIONS IN: laccase activity; INVOLVED IN: response to copper ion; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 12 (TAIR:AT5G05390.1); Has 10120 Blast hits to 8186 proteins in 1337 species: Archae - 37; Bacteria - 4008; Metazoa - 431; Fungi - 3685; Plants - 1575; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G40370-MONOMEREC:1.10.3.2eggNOG:COG2132eggNOG:KOG1263
EMBL:AC007020EMBL:AF506030EMBL:CP002685EnsemblPlants:AT2G40370
EnsemblPlants:AT2G40370.1entrez:818630Gene3D:2.60.40.420GeneID:818630
Genevisible:Q9SIY8GO:GO:0005507GO:GO:0016722GO:GO:0046274
GO:GO:0046688GO:GO:0048046GO:GO:0052716Gramene:AT2G40370.1
hmmpanther:PTHR11709hmmpanther:PTHR11709:SF22HOGENOM:HOG000241916InParanoid:Q9SIY8
InterPro:IPR001117InterPro:IPR002355InterPro:IPR008972InterPro:IPR011706
InterPro:IPR011707InterPro:IPR017761InterPro:IPR033138KEGG:ath:AT2G40370
KO:K05909OMA:KSAPCCGPaxDb:Q9SIY8Pfam:PF00394
Pfam:PF07731Pfam:PF07732Pfam:Q9SIY8PhylomeDB:Q9SIY8
PIR:F84828PRIDE:Q9SIY8PRO:PR:Q9SIY8PROSITE:PS00079
PROSITE:PS00080ProteinModelPortal:Q9SIY8Proteomes:UP000006548RefSeq:NP_181568.1
scanprosite:PS00079scanprosite:PS00080SMR:Q9SIY8STRING:3702.AT2G40370.1
SUPFAM:SSF49503TAIR:AT2G40370tair10-symbols:LAC5TIGRfam:TIGR03389
TIGRFAMs:TIGR03389UniGene:At.37061UniProt:Q9SIY8
Coordinates (TAIR10) chr2:-:16858192..16860593
Molecular Weight (calculated) 64136.60 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.19
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVTKSLLCF ISFVAFLLFS SVAEANKAHH HEFIIQATKV KRLCETHNSI TVNGMFPGPM LVVNNGDTLV VKVINRARYN ITIHWHGVRQ MRTGWADGPE
101: FVTQCPIRPG SSYTYRFTIQ GQEGTLWWHA HSSWLRATVY GSLLVFPPAG SSYPFTKPHR NVPLLLGEWW DANPVDVLRE SIRTGGAPNN SDAYTINGQP
201: GDLYKCSSQD TTVVPINVGE TILLRVINSA LNQPLFFTVA NHKLTVVGAD ASYLKPFTTN VIVLGPGQTT DVLITGDQPP NRYYMAARAY QSAQNAPFGN
301: TTTTAILQYK SAPCCGVGGG SGTKKGNSFK PIMPILPAYN DTNTVTRFSQ SFRSLRRAEV PTEIDENLFV TIGLGLNNCP KNFRSRRCQG PNGTRFTASM
401: NNVSFALPSN YSLLQAHHHG IPGVFTTDFP AKPPVKFDYT GNNISRSLYQ PDRGTKLYKL KYGSRVQIVL QDTGIVTPEN HPIHLHGYDF YIIAEGFGNF
501: NPKKDTAKFN LEDPPLRNTV GVPVNGWAVI RFIADNPGVW IMHCHLDAHI SWGLAMAFLV ENGNGVLQTI EQPPHDLPVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)