AT3G50400.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G23540.1); Has 3614 Blast hits to 3577 proteins in 268 species: Archae - 0; Bacteria - 447; Metazoa - 0; Fungi - 31; Plants - 3117; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:18704797..18706437 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41500.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKSIFFVPV LVLFFFGSRF SRVASAGDQR ALAASFVFGD SLVDAGNNNY LQTLSRANSP PNGIDFKPSR GNPTGRFTNG RTIADIVGEK LGQQSYAVPY 101: LAPNASGEAL LNGVNYASGG GGILNATGSV FVNRLGMDIQ VDYFTNTRKQ FDKLLGQDKA RDYIRKRSLF SVVIGSNDFL NNYLVPFVAA QARLTQTPET 201: FVDDMISHLR NQLKRLYDMD ARKFVVGNVA PIGCIPYQKS INQLNDKQCV DLANKLAIQY NARLKDLLTV ELKDSLKDAH FVYANVYDLF MDLIVNFKDY 301: GFRTASEACC ETRGRLAGIL PCGPTSSLCT DRSKHVFWDA YHPTEAANLL IADKLLYGDS KFVTPFNLLH LRDL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)