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AT2G05910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.517
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF567)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT5G20640.1); Has 302 Blast hits to 301 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWT2eggNOG:ENOG410YHS0EMBL:AC005970EMBL:AK176264
EMBL:BT012170EMBL:CP002685EnsemblPlants:AT2G05910EnsemblPlants:AT2G05910.1
entrez:815143GeneID:815143Genevisible:Q9ZUF7Gramene:AT2G05910.1
hmmpanther:PTHR31087hmmpanther:PTHR31087:SF3HOGENOM:HOG000239786InParanoid:Q9ZUF7
InterPro:IPR007612InterPro:IPR025659KEGG:ath:AT2G05910OMA:FEIKGYF
PaxDb:Q9ZUF7Pfam:PF04525Pfam:Q9ZUF7PhylomeDB:Q9ZUF7
PIR:H84472PRIDE:Q9ZUF7PRO:PR:Q9ZUF7ProteinModelPortal:Q9ZUF7
Proteomes:UP000006548RefSeq:NP_178648.1SMR:Q9ZUF7STRING:3702.AT2G05910.1
SUPFAM:SSF54518TAIR:AT2G05910UniGene:At.41132UniProt:Q9ZUF7
Coordinates (TAIR10) chr2:-:2258512..2259376
Molecular Weight (calculated) 21132.60 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.06
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAVVSKLYC SSMEEVMVVR RRPHVVNGGG FVVTDYKEKI VFKIDGCGVL GTKGELVLRD SDGNDLLLIH KKGGVVQALS IHNKWKGYSY DYQGSPKPVF
101: TLRDPKHSCF SITSSIRISV GPGNCYFDVK GYFPDRDCSI VDSKGNVIAQ VKEWIGSRDI YKVVTKPSVD KAFVFGVIAV LDYIYGESTS C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)