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AT3G07970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.
Computational
Description (TAIR10)
QUARTET 2 (QRT2); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G57510.1); Has 4184 Blast hits to 4170 proteins in 494 species: Archae - 6; Bacteria - 1270; Metazoa - 14; Fungi - 1271; Plants - 1492; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G07970-MONOMERCAZy:GH28EC:3.2.1.15eggNOG:COG5434
eggNOG:ENOG410IF8FEMBL:AC013483EMBL:CP002686EnsemblPlants:AT3G07970
EnsemblPlants:AT3G07970.1entrez:819988Gene3D:2.160.20.10GeneID:819988
Genevisible:Q9SFB7GO:GO:0004650GO:GO:0005576GO:GO:0005618
GO:GO:0009830GO:GO:0009901GO:GO:0010047GO:GO:0045490
GO:GO:0048235Gramene:AT3G07970.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF28
HOGENOM:HOG000237792InParanoid:Q9SFB7InterPro:IPR000743InterPro:IPR006626
InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT3G07970OMA:IFQDIIM
PaxDb:Q9SFB7Pfam:PF00295Pfam:Q9SFB7PhylomeDB:Q9SFB7
PRIDE:Q9SFB7PRO:PR:Q9SFB7PROSITE:PS00502ProteinModelPortal:Q9SFB7
Proteomes:UP000006548RefSeq:NP_187454.2scanprosite:PS00502SMART:SM00710
SMR:Q9SFB7STRING:3702.AT3G07970.1SUPFAM:SSF51126TAIR:AT3G07970
tair10-symbols:QRT2TMHMM:TMhelixUniGene:At.40276UniProt:Q9SFB7
Coordinates (TAIR10) chr3:+:2541006..2543370
Molecular Weight (calculated) 48574.90 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.31
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)