AT1G74460.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, hypocotyl, root, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT5G37690.1); Has 3571 Blast hits to 3529 proteins in 266 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 48; Plants - 3074; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:27988150..27989765 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40698.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 366 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFCAIFVLF IVLAINGYDC KIVQFIFGDS LSDVGNNKNL PRSLATANLP FYGIDFGNGL PNGRFTNGRT VSDIIGDKIG LPRPVAFLDP SMNEDVILEN 101: GVNYASGGGG ILNETGGYFI QRFSLWKQIE LFQGTQDVVV AKIGKKEADK FFQDARYVVA LGSNDFINNY LMPVYSDSWK YNDQTFVDYL METLESQLKV 201: LHSLGARKLM VFGLGPMGCI PLQRALSLDG NCQNKASNLA KRFNKAATTM LLDLETKLPN ASYRFGEAYD LVNDVITNPK KYGFDNSDSP CCSFYRIRPA 301: LTCIPASTLC KDRSKYVFWD EYHPTDKANE LVANILIKRF DFMRADDGIS HAPSPAPDIS PSSDNN |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)