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AT4G38080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G22510.1); Has 4732 Blast hits to 2740 proteins in 428 species: Archae - 22; Bacteria - 604; Metazoa - 1100; Fungi - 265; Plants - 1375; Viruses - 486; Other Eukaryotes - 880 (source: NCBI BLink).
Protein Annotations
EMBL:AL035538EMBL:AL161592EMBL:BT014761EMBL:BT014852
EMBL:CP002687EnsemblPlants:AT4G38080EnsemblPlants:AT4G38080.1entrez:829964
GeneID:829964Gramene:AT4G38080.1hmmpanther:PTHR33088HOGENOM:HOG000153497
KEGG:ath:AT4G38080OMA:QPTIPNIPIR:T05635Proteomes:UP000006548
RefSeq:NP_195521.1STRING:3702.AT4G38080.1TAIR:AT4G38080UniGene:At.43879
UniProt:Q9SZK8
Coordinates (TAIR10) chr4:+:17883012..17883398
Molecular Weight (calculated) 13895.00 Da
IEP (calculated) 11.92
GRAVY (calculated) -0.10
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLKNSFVT SLVIALTFTS FFTSLSAHRH LLQSTPVTQP PALTFPPLPK TTMPPVPSLP TPGQQTLPQP QPTLPQPTGL PPMPSTQIPS LPNQVQPTIP
101: NIPQINFPSN FPFNFPFNIP FLTPPPSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)