AT5G09480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 11004 Blast hits to 3872 proteins in 771 species: Archae - 28; Bacteria - 3950; Metazoa - 1856; Fungi - 491; Plants - 328; Viruses - 210; Other Eukaryotes - 4141 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2951181..2951615 | ||||||||||||||||||||
| Molecular Weight (calculated) | 15985.60 Da | ||||||||||||||||||||
| IEP (calculated) | 3.78 | ||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||
| Length | 144 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNVRLPILV SSVLFLVFIS SSLLFPTPSF AARVSHSLVQ EEVKKVPEYT EPEEPEVPEE PELPSPEEPE IPEEPEIPEE PEVPGEPEVP EEPEEPEEPE 101: GSTFEFPSWF PSFPIPGVNG GLPKTEKTKP TSTVEEVNVS NKKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)