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AT5G58860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18544608 (2008): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome P450, family 86, subfamily A, polypeptide 1
Curator
Summary (TAIR10)
Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.
Computational
Description (TAIR10)
cytochrome P450, family 86, subfamily A, polypeptide 1 (CYP86A1); FUNCTIONS IN: alkane 1-monooxygenase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process, suberin biosynthetic process; LOCATED IN: vacuole; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 2 (TAIR:AT4G00360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58860-MONOMERBioCyc:MetaCyc:AT5G58860-MONOMERBRENDA:1.14.15.3EC:1.14.13.205
eggNOG:COG2124eggNOG:KOG0157EMBL:AB016885EMBL:AY081266
EMBL:BT003345EMBL:CP002688EMBL:X90458EnsemblPlants:AT5G58860
EnsemblPlants:AT5G58860.1entrez:836003Gene3D:1.10.630.10GeneID:836003
Genevisible:P48422GO:GO:0005506GO:GO:0005773GO:GO:0006631
GO:GO:0010345GO:GO:0016021GO:GO:0018685GO:GO:0020037
Gramene:AT5G58860.1gramene_pathway:1.14.13.-gramene_pathway:PWY-1121gramene_pathway:PWY-321
hmmpanther:PTHR24296hmmpanther:PTHR24296:SF26HOGENOM:HOG000237580InParanoid:P48422
InterPro:IPR001128InterPro:IPR002401InterPro:IPR017972KEGG:ath:AT5G58860
KO:K15401OMA:NRTIRTRPaxDb:P48422Pfam:P48422
Pfam:PF00067PhylomeDB:P48422PIR:JC5965PRIDE:P48422
PRINTS:PR00385PRINTS:PR00463PRO:PR:P48422PROSITE:PS00086
ProteinModelPortal:P48422Proteomes:UP000006548RefSeq:NP_200694.1scanprosite:PS00086
SMR:P48422STRING:3702.AT5G58860.1SUPFAM:SSF48264TAIR:AT5G58860
tair10-symbols:CYP86tair10-symbols:CYP86A1TMHMM:TMhelixUniGene:At.23665
UniGene:At.67695UniProt:P48422
Coordinates (TAIR10) chr5:-:23765999..23767997
Molecular Weight (calculated) 58556.60 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.20
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALNSILTG YAVAALSVYA LWFYFLSRRL TGPKVLPFVG SLPYLIANRS RIHDWIADNL RATGGTYQTC TMVIPFVAKA QGFYTVTCHP KNVEHILKTR
101: FDNYPKGPMW RAAFHDLLGQ GIFNSDGDTW LMQRKTAALE FTTRTLRQAM ARWVNGTIKN RLWLILDRAV QNNKPVDLQD LFLRLTFDNI CGLTFGKDPE
201: TLSLDLPDNP FSVAFDTATE ATLKRLLYTG FLWRIQKAMG IGSEDKLKKS LEVVETYMND AIDARKNSPS DDLLSRFLKK RDVNGNVLPT DVLQRIALNF
301: VLAGRDTSSV ALSWFFWLVM NNREVETKIV NELSMVLKET RGNDQEKWTE EPLEFDEADR LVYLKAALAE TLRLYPSVPQ DFKYVVDDDV LPDGTFVPRG
401: STVTYSIYSI GRMKTIWGED CLEFRPERWL TADGERFETP KDGYKFVAFN AGPRTCLGKD LAYNQMKSVA SAVLLRYRVF PVPGHRVEQK MSLTLFMKNG
501: LRVYLQPRGE VLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)