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AT3G52780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Purple acid phosphatases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 22 (TAIR:AT3G52820.1); Has 2203 Blast hits to 2179 proteins in 456 species: Archae - 3; Bacteria - 801; Metazoa - 198; Fungi - 77; Plants - 777; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G52780-MONOMERBioCyc:ARA:GQT-2193-MONOMEREC:3.1.3.2eggNOG:COG1409
eggNOG:KOG1378EMBL:AF492666EMBL:AL353912EMBL:BT029748
EMBL:CP002686EnsemblPlants:AT3G52780EnsemblPlants:AT3G52780.1entrez:824444
Gene3D:2.60.40.380Gene3D:3.60.21.10GeneID:824444Genevisible:Q9LXI7
GO:GO:0003993GO:GO:0005576GO:GO:0016311GO:GO:0046872
gramene_pathway:3.1.3.26gramene_pathway:PWY-4702gramene_pathway:PWY-4781hmmpanther:PTHR22953
hmmpanther:PTHR22953:SF38HOGENOM:HOG000238330InParanoid:Q9LXI7InterPro:IPR004843
InterPro:IPR008963InterPro:IPR015914InterPro:IPR025733InterPro:IPR029052
KEGG:ath:AT3G52780OMA:HVAADDYPaxDb:Q9LXI7Pfam:PF00149
Pfam:PF14008Pfam:PF16656Pfam:Q9LXI7PhylomeDB:Q9LXI7
PIR:T49031PRIDE:Q9LXI7PRO:PR:Q9LXI7ProteinModelPortal:Q9LXI7
Proteomes:UP000006548RefSeq:NP_190846.1RefSeq:NP_850686.1SMR:Q9LXI7
STRING:3702.AT3G52780.1SUPFAM:SSF49363SUPFAM:SSF56300TAIR:AT3G52780
tair10-symbols:ATPAP20tair10-symbols:PAP20TMHMM:TMhelixUniGene:At.35263
UniProt:Q9LXI7
Coordinates (TAIR10) chr3:-:19561525..19564195
Molecular Weight (calculated) 48464.10 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.39
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKVLGLVAI LLIVLAGNVL SYDRQGTRKN LVIHPTNEDD PTFPDQVHIS LVGPDKMRIS WITQSSISPS VVYGTVSGKY EGSANGTSSS YHYLLIYRSG
101: QINDVVIGPL KPNTVYYYKC GGPSSTQEFS FRTPPSKFPI KFAVSGDLGT SEWSKSTLEH VSKWDYDVFI LPGDLSYANM YQPLWDTFGR LVQPLASQRP
201: WMVTHGNHEL EKIPILHSNP FTAYNKRWRM PFEESGSSSN LYYSFNVYGV HIIMLGSYTD FEPGSEQYQW LENNLKKIDR KTTPWVVAVV HAPWYNSNEA
301: HQGEKESVEM KESMETLLYK ARVDLVFAGH VHAYERFSRV YQDKFDKCGP VYINIGDGGN LEGLATKYRD PNPEISLFRE ASFGHGQLVV ENATHARWEW
401: HRNDDDVSVE KDSVWLTSLL ADSSCKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)