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AT3G48580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 11 (XTH11); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: embryo, pedicel, flower, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 3 (TAIR:AT3G25050.1); Has 1650 Blast hits to 1644 proteins in 223 species: Archae - 2; Bacteria - 196; Metazoa - 0; Fungi - 82; Plants - 1314; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48580-MONOMERBioCyc:ARA:GQT-2167-MONOMERCAZy:GH16EC:2.4.1.207
eggNOG:ENOG410JWHDeggNOG:ENOG41104XBEMBL:AL133315EMBL:AY088649
EMBL:BT025721EMBL:CP002686EnsemblPlants:AT3G48580EnsemblPlants:AT3G48580.1
entrez:824018ExpressionAtlas:Q9SMP1Gene3D:2.60.120.200GeneID:824018
Genevisible:Q9SMP1GO:GO:0004553GO:GO:0005618GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555
HOGENOM:HOG000236368InParanoid:Q9SMP1InterPro:IPR000757InterPro:IPR008264
InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455OMA:QRFRLWF
PaxDb:Q9SMP1Pfam:PF00722Pfam:PF06955Pfam:Q9SMP1
Pfscan:PS51762PIR:T46202PIRSF:PIRSF005604PRIDE:Q9SMP1
PRINTS:PR00737PRO:PR:Q9SMP1PROSITE:PS51762ProteinModelPortal:Q9SMP1
Proteomes:UP000006548RefSeq:NP_566910.1SMR:Q9SMP1SUPFAM:SSF49899
TAIR:AT3G48580tair10-symbols:XTH11UniGene:At.35708UniProt:Q9SMP1
Coordinates (TAIR10) chr3:+:18007238..18008341
Molecular Weight (calculated) 31940.90 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.49
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGSDQKILL MVMVVVAVVA AAQGQEETTG FVTWGNNYYQ TWGHQALVIN KTSELQLTLD KNSGSGFESQ LIYGSGYFNV RIKAPQTTST GVITSFYLIS
101: RSSRHDELCF QILGKNGPPY LLNTNMYLYG EGGKDQRFRL WFDPTKDYHS YSFLWNPNQL VFYVDDTPIR VYSKNPDVYY PSVQTMFLMG SVQNGSIIDP
201: KQMPYIAKFQ ASKIEGCKTE FMGIDKCTDP KFWWNRKQLS SKEKTLYLNA RKTYLDYDYC SDRQRYPKVP QECGSYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)