AT5G39520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1997) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1997); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G39530.1); Has 157 Blast hits to 157 proteins in 60 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15823920..15825416 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 26440.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.90 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||
| Length | 230 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVSSAVYSC PGMIGSCGQV RSKRWRVKCH LSPVKSAKYS SKISTDIALH ESPQALFDEY LEDKSRVFEA MFPDKPKNYR LNEEEWRIQM LPIKFFFLTA 101: CPVVVMRIRC KSNGQDYPSD VPLHITKVLE LNMTKWELQG LDRVMEPTDF TLGVKGALYP DRRGRHTRLK GRLETTISFV LPSVLALVPE DVRRNMANAI 201: LAGLVDNMKH RVIESLVADY SKFKYERKKH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)