suba logo
AT2G47190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 2
Curator
Summary (TAIR10)
Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.
Computational
Description (TAIR10)
myb domain protein 2 (MYB2); FUNCTIONS IN: calmodulin binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 112 (TAIR:AT1G48000.1); Has 8762 Blast hits to 8122 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 467; Plants - 5817; Viruses - 4; Other Eukaryotes - 1755 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB052248EMBL:AC002337
EMBL:AK229140EMBL:AY519579EMBL:BT010949EMBL:BT011656
EMBL:CP002685EMBL:D14712EnsemblPlants:AT2G47190EnsemblPlants:AT2G47190.1
entrez:819332Gene3D:1.10.10.60GeneID:819332GO:GO:0001046
GO:GO:0003677GO:GO:0003700GO:GO:0005516GO:GO:0005634
GO:GO:0009414GO:GO:0009651GO:GO:0009723GO:GO:0009737
GO:GO:0009751GO:GO:0016036GO:GO:0045893GO:GO:0046686
Gramene:AT2G47190.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF568HOGENOM:HOG000237600
IntAct:Q39028InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT2G47190KO:K09422OMA:FNDWGCVPfam:PF00249
Pfscan:PS51294PhylomeDB:Q39028PIR:JQ2390PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_182241.1SMART:SM00717SMR:Q39028
STRING:3702.AT2G47190.1SUPFAM:SSF46689TAIR:AT2G47190tair10-symbols:ATMYB2
tair10-symbols:MYB2UniGene:At.36396UniProt:Q39028
Coordinates (TAIR10) chr2:+:19376284..19377297
Molecular Weight (calculated) 31449.40 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.81
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)