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AT3G06490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 108
Curator
Summary (TAIR10)
putative transcription factor MYB108 (MYB108) mRNA,
Computational
Description (TAIR10)
myb domain protein 108 (MYB108); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 78 (TAIR:AT5G49620.1); Has 8634 Blast hits to 8004 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 415; Plants - 5744; Viruses - 4; Other Eukaryotes - 1741 (source: NCBI BLink).
Protein Annotations
BioGrid:5162eggNOG:COG5147eggNOG:KOG0048EMBL:AC020580
EMBL:AF262733EMBL:AY519584EMBL:CP002686EnsemblPlants:AT3G06490
EnsemblPlants:AT3G06490.1entrez:819827Gene3D:1.10.10.60GeneID:819827
Genevisible:Q9LDE1GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006952GO:GO:0009620GO:GO:0009651
GO:GO:0009723GO:GO:0009737GO:GO:0009753Gramene:AT3G06490.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF494HOGENOM:HOG000237600InParanoid:Q9LDE1
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G06490
KO:K09422OMA:NYIATNGPaxDb:Q9LDE1Pfam:PF00249
Pfam:Q9LDE1Pfscan:PS51294PhylomeDB:Q9LDE1PRIDE:Q9LDE1
PRO:PR:Q9LDE1PROSITE:PS51294ProteinModelPortal:Q9LDE1Proteomes:UP000006548
RefSeq:NP_187301.1SMART:SM00717SMR:Q9LDE1STRING:3702.AT3G06490.1
SUPFAM:SSF46689TAIR:AT3G06490tair10-symbols:AtMYB108tair10-symbols:BOS1
tair10-symbols:MYB108UniGene:At.14823UniProt:Q9LDE1
Coordinates (TAIR10) chr3:+:2004298..2006358
Molecular Weight (calculated) 37021.60 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.87
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)