AT5G52400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.502 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 715, subfamily A, polypeptide 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP715A | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 715, subfamily A, polypeptide 1 (CYP715A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 735, subfamily A, polypeptide 1 (TAIR:AT5G38450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21272949..21275509 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58986.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFFEMSRVW YIFFKVFVVV ICLMFLKLFL RCWIWPVRAQ KKLRGNGFVG PAPSFPFGNL NDMKKLKMAS VVVDNSKSST IINHDIHSIA LPHFARWQQE 101: YGKVFVYWLG IEPFVYVADP EFLSVMSKGV LGKSWGKPNV FKKDREPMFG TGLVMVEGDD WTRHRHIITP AFAPLNLKVM TNMMVESVSN MLDRWGIQIN 201: SGNPEFDMES EIIGTAGEII AKTSFGVTGE NGTQVLKNLR AVQFALFNSN RYVGVPFSNI LSYKQTVKAK GLGHEIDGLL LSFINKRKIS LAEGDDQGHD 301: LLGMLLKADQ KGNFTAKELV DECKTFFFAG HETTALALTW TFMLLAIHPE WQDTIREEIR EVIGDSKIEY NKLAGLKKMS WVMNEVLRLY PPAPNAQRQA 401: RNDIEVNGRV IPNGTNIWID VVAMHHDVEL WGDDVNEFKP ERFDGNLHGG CKNKMGYMPF GFGGRMCIGR NLTTMEYKIV LSLVLSRFEI SVSPGYRHSP 501: TYMLSLRPGY GLPLIIRPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)