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AT2G22760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G22770.1); Has 2563 Blast hits to 2557 proteins in 132 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 23; Plants - 2520; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:2159eggNOG:ENOG410JNNVeggNOG:ENOG411144MEMBL:AC005617
EMBL:AC006340EMBL:AF488563EMBL:CP002685EMBL:DQ446550
EMBL:DQ653016EnsemblPlants:AT2G22760EnsemblPlants:AT2G22760.1entrez:816806
ExpressionAtlas:Q1PF16Gene3D:4.10.280.10GeneID:816806Genevisible:Q1PF16
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT2G22760.1hmmpanther:PTHR23042hmmpanther:PTHR23042:SF61
HOGENOM:HOG000240300InParanoid:Q1PF16IntAct:Q1PF16InterPro:IPR011598
iPTMnet:Q1PF16KEGG:ath:AT2G22760ncoils:CoilOMA:SKGCMIN
PaxDb:Q1PF16Pfam:PF00010Pfam:Q1PF16Pfscan:PS50888
PhylomeDB:Q1PF16PIR:E84616PRIDE:Q1PF16PRO:PR:Q1PF16
PROSITE:PS50888ProteinModelPortal:Q1PF16Proteomes:UP000006548RefSeq:NP_179861.2
SMART:SM00353SMR:Q1PF16STRING:3702.AT2G22760.1SUPFAM:SSF47459
TAIR:AT2G22760UniGene:At.39393UniProt:C0SV56UniProt:Q1PF16
Coordinates (TAIR10) chr2:+:9678012..9679165
Molecular Weight (calculated) 33789.00 Da
IEP (calculated) 6.08
GRAVY (calculated) -0.34
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)