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AT2G21530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SMAD/FHA domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SMAD/FHA domain-containing protein ; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); Has 459 Blast hits to 455 proteins in 163 species: Archae - 26; Bacteria - 275; Metazoa - 3; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYKIeggNOG:ENOG4111QZYEMBL:AK118718EMBL:BT024599
EMBL:CP002685EnsemblPlants:AT2G21530EnsemblPlants:AT2G21530.1entrez:816692
Gene3D:2.60.200.20GeneID:816692GO:GO:0009507GO:GO:0009535
GO:GO:0009570Gramene:AT2G21530.1hmmpanther:PTHR23308hmmpanther:PTHR23308:SF29
HOGENOM:HOG000148315InterPro:IPR000253InterPro:IPR008984KEGG:ath:AT2G21530
OMA:MPAPFEIPfam:PF00498Pfscan:PS50006PhylomeDB:Q8GWP4
PROSITE:PS50006Proteomes:UP000006548RefSeq:NP_179748.2SMART:SM00240
STRING:3702.AT2G21530.1SUPFAM:SSF49879TAIR:AT2G21530UniGene:At.19824
UniGene:At.46763UniProt:Q8GWP4
Coordinates (TAIR10) chr2:+:9219372..9220464
Molecular Weight (calculated) 22676.80 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.27
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MEITISQLCS RVKFSSSSSS SSLFCFYGNS NRNNLNGAVS VNCLRENEQI SNISFIAKKP RSHAPVVRTT RASLDENQSP TSGGERWLLK PVGDGDTRHI
101: GYKVAMPAPF EISSGQVTIG RLPEKADVVI PVATVSGVHA TINTNEKNLL VTDMNSTNGT FIEDKRLIPG VAAPAFPGTR ITFGDTNLAI FRVFKLQDSE
201: ESIEKPTTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)